Construct · 1 fields · 1 citations

pseudotime: a standalone construct

One name. One construct. A landmark on the map.

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Computational biology

an ordering of single cells along an inferred progression that stands in for elapsed time in a process.

In computational biology, pseudotime refers to an ordering of single cells along an inferred progression that stands in for elapsed time in a process. This meaning comes from Trapnell (2014) in Nature Biotechnology.[1]

Unit
Recovery means
Measured by

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Nearby constructs

process3 fields · 3 citationsjingle · one word, three constructs progression3 fields · 6 citationsjingle · one word, three constructs

References

Trapnell, C., Cacchiarelli, D., Grimsby, J., Pokharel, P., Li, S., Morse, M., Lennon, N. J., Livak, K. J., Mikkelsen, T. S., & Rinn, J. L. (2014). The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. Nature Biotechnology, 32(4), 381-386. https://doi.org/10.1038/nbt.2859

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